DJ,
Going into hives twice in two days is not good for a queen right hive. It is even worse for a new queen who has not had a chance to prove that she is a good queen. New queens are very hard to spot even for experienced beekeepers. When a new queen hatches she needs time to get strong, orient to the hive location, mate and then develop her ovaries before she starts to lay eggs. This is about 11 days. Then you need to give her time for the larvae to hatch. The larvae pheromones, in large numbers, are what tell the bees that she is a good queen. Figure at least 20 days from when you know she hatched.
Jim