I really don't understand how bees are able to draw the comb you describe over brood frames. Above those frames should be either a covering of some sort - a plastic sheet, hessian, canvas, oilcloth or similar, placed directly on the frame top bars - or, more usually - a crown board or inner cover made from plywood or similar, with a beespace between that board and the frame top-bars.
In either case, there should be insufficient space there in which comb can be drawn. So - how that's been allowed to happen is something of a mystery (to me).
But the reason that bees draw honey comb over their brood - is because that's what bees do - that is, whenever they are given the opportunity to do so. Here's a shot of a De Layens frame, which as you can see is an extra deep frame - a lovely example of a circular brood nest, with honey stores above:
Now as the modern trend is to install oblong shaped frames into beehives, if you divide that extra-deep frame into three oblong frames, the upper third becomes honey, and the two lower thirds become a divided brood nest - which roughly equates to a double brood box with a super over. But here, it's all on one frame - demonstrating that this is pretty-much the natural layout of a honey-bee's comb. So your bees are behaving quite naturally.
Ok - moving on to the frames themselves. One of the key lessons for any beekeeper to learn is that bees will do what they want to do, when
they want to do it, not when the beekeeper wants it to happen. This is particularly true of drawing comb.
Now the exact reason why they didn't draw out combs 1 and 10 needn't concern us - it might be that the nights are too cold and those combs are furthest away from the heat of the colony, or it might be that they consider 8 combs are all that they need at this moment - but the fact remains that they have decided NOT to draw those combs out yet, and trying to force them (as you've found out) just doesn't work. So I suggest you put those frames back as they were ...
A 10-frame deep box is a big cavity for a nuc to build-up in - they have showed you that it's too big, by not drawing-out frames 1 and 10 - so I'm fairly confident when saying that putting a super on top will only make the situation worse, and not improve it.
Be guided by the bees - they know what they want, and constantly give us clues. The trick is to observe what they're doing and interpret it as correctly as humanly possible. We don't always get it right of course - that's called gaining experience the hard way.
LJ