Update:
I checked them out this weekend. The shallow on top still has some capped and larva (plus honey). I examined the new deep (with built out frames) and to my surprise it was filling with honey.
That leaves the medium brood on the bottom. I couldn't get to it and will try again this evening. I just know it is going to crumble when I start pulling it apart.
One thing I failed to mention is that when I captured these bees the only had a top entrance through a rotted out crack in the cover.